PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3102 (475 amino acids)

SeqID: Echvi_3102 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3102
MSNVEPKVKATFIKENFLLQTEMANVLYHDYAKNMPIIDYHCHLSPKDLAENRKFDNISK
IWLAGDHYKWRAMRTLGIDETYITGTASDKEKFQKWAYTVPYTMRNPLYHWTHLELLRYF
GIEELLSADNADEIYQQTNRQLEQDSHSTQSLLTGMNVETVCTTDDPTDSLEFHRKAAEN
DMPIGLFPTFRPDKSFAVENLGQYKAYLEQLGSASNMEINSHEQLMAALENRIDFFHQHG
GRLADHGLEQLYYFPLGTFDIEILFKKILADKPLDREETAYFKFVTLLELCRLYHAKGWT
QQFHLGALRNTNERMLETLGPDTGFDSIGDFDQAKSLSQFLNELDKTDQLCKTILYNLNP
RDNEVMATMTGNFNDGSIRGKVQFGSGWWFLDQKDGMEKQMNTLSNMGLLSCFVGMLTDS
RSFLSFPRHEYFRRTLCNLLGNDVANGELPADEKWLGKLVQDICYNNAKSYFNFQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory