PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3348 (400 amino acids)

SeqID: Echvi_3348 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 8472786: Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3348
MTYDIAIVGGGIVGLATGLKIIQQRPELKVVILEKEHELAKHQTGNNSGVIHSGLYYKPG
SLKATNCISGYHELIQFCEEENIPFEITGKVVVATKDEQLPLLQNLLKRGLQNGLKGTRQ
ITLDELKEYEPYCKGVAALHVPQTGIVDYKKVALAYGEKFKSLGGEILLDHQVKKINHKA
NQTELITTGKTILSRLMINCAGLYSDKVADMNGELDLDVKIIPFRGEYYKLKKEREYLVK
NLIYPVPDPNFPFLGVHFTRMMKGGVEAGPNAVMAFKREGYKRTDFNLKEFRESITWPGL
QKVAAKYWKTGIGEYYRSFSKAAFTTALQELIPDIKEDDLVDGGAGVRAQACDRTGGLLD
DFAITENTHAINVLNAPSPAATSSLSIGGTVSARALKRFL