PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3547 (262 amino acids)

SeqID: Echvi_3547 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 119898: Iron(III) dicitrate transport ATP-binding protein fecE]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3547
MIQQIEHPVVEVHDLMVSYGQNPVLWNIDLTLPAGALIGILGPNGAGKSTLIKAIMGLVE
ANSGYSKLFDQALNQVRNRVSYVPQRESVDWDFPASALDIVMMGTYHHLGLFKRPGKKEK
QLAMDCLEKVNMKAFAKRQISELSGGQQQRVFIARALAQQADIYFMDEPFAGVDMSTEKA
LVELFREMTAGGKTVIVVHHDIYSAGTYFDWLIMLNMHLVASGPTKDVLTEELLTKTYGG
KLSTLTDIGEVIKKSDFNPLKS