PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3632 (548 amino acids)

SeqID: Echvi_3632 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3632
MLHKILKIHPKDNVLVALTDLKAGEQIEFEGNEITLTHDVKAKHKFAEAAFATDEDIYMY
GIICGKAMNAIAKGEVLTTQNVAHKTSEFTGVRDFKPWNAPDVSKWADRTFMGYHREDGQ
VGTANYWLVIPLVFCENRNIEIMKNAFVEELGFAKPNKYKSFVKQMKDLYTQGKKEEIAT
LSVETAEQDGESRIFKNIDGIKFLTHQAGCGGIRQDSEMLCGLIAGYINNPNVAGATILS
LGCQNAQPSILREKLDKINPDLKKPVIILEQQQEGTENTLLTNAIQKTFLALTDADQLER
QPAPLSKLTVGLECGGSDGFSGISANPSVGHASDLVVALGGKTILSEFPELCGVEQELIN
RCTTDESADKFVTLMRAYAASAEAVGSGFDMNPSPGNIKDGLITDAMKSAGAAKKGGTSP
IVDVLDYAEYVTKPGLNLLCTPGNDVESTTAMAGSGANVILFTTGLGTPTGNPVTPVLKV
SSNHILAEKMDDIIDINTGGVISGDKTIDQMGEEILEHIIEVASGNKKAKAMTLNQDDFI
PWKRGVSL