PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3865 (982 amino acids)

SeqID: Echvi_3865 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3865
MSNKPANLSPFLVGLAKELEGDFYYDQLMKTLYATDASVYREMPLAVAMPKTKGDIKKLI
HFANTHKTSLIPRTAGTSLAGQCVGDGIVVDVSKYFTKILEFNKEEGWVRVQPGVVRDEL
NAFLKPHGYFFSPVTSTANRAMIGGMVGNNSCGTTSIIYGSTREHTLELQTILSDGSEVT
FRALSKAEFEEKKKLETLEGKLYREIYHELSQPEQQENIRKQFPKPSIQRRNTGYAVDYL
LETAVFSEHDTAFDFCKLLCGSEGTLAFTTEIKIHLDPLPAPKDVVVAAHFGTIHESMKA
TQLAMKHFPTACELMDKIILDCTKENIEQSKNRYFVEGDPEGILMVEFRDETEEGALGQA
QKMIDAMKAAGLGYAYPIITGERTKNVWTLRSAGLGLLANIPGDRKAVACIEDTAVDIDD
LADFIDEFGEIMKGFGQKPVHYAHAGAGEIHLRPILDLKKSEDVEDFYKITEAVAKLVKK
YDGSLSGEHGDGRVRAAFIPIMVGEENYQLFRRIKQSWDPNAIFNPGKIVDTAPMNSFLR
YERDMVTPEFETTMDFGHVGGILRAAEKCNGSGDCRKLPVSGGTMCPSYMATKNERDTTR
GRANTLREFLTKNTQPNPFDHPEIKEVMDLCLSCKGCTSECPSNVDMSSLKAEFLHQYHK
THGIPLRSKAFAYINNLNELGSLVPGMTNFLMTNKATGNMMKKVLGVAEKRQLPTIAKVN
LRKWYNKHYGNLPAPSKKVGAVHFFCDEFTNFNDTEIGIKAIQLLHHLGYEVKLADHPES
GRGAISKGLLDRAKKLANQNVQLFKDKVTLDEPLVGVEPSAILTFKDEYPRLVDKYLVED
AKKLKRHSMMVDEFLAKEAMRGNISADQFTKAHKKVLLHGHCHQKSLSSVSFTQKLLTLP
ENYTLETIPSGCCGMAGSFGYEEEHYEVSMNVGELVLFPTIRKADKATVVAAPGTSCRHQ
IADGTGRKALHPVEVLFDAAGL