PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3886 (547 amino acids)

SeqID: Echvi_3886 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 129041: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3886
MSDTMEEGVIAAWLKKVGDDVKAGDILAEVETDKATMELESYDEGVLLHIGVEEKDAVPV
NGVIAIIGEKGEDIDDLLKDLDGGGSGDADAAKSEAPAEDKKEESSSEADPSEEIDTSDI
NANLITMPKMSDTMQEGTIASWLKKEGDEVKSGDILAEVETDKATMELESYDDGVLLHIG
VQEGDSVPIDGVIAVIGEKGADYEKLLKAHEQKSNGGSDEKPAAKEEEKKEAPKEASKPA
PKKEETAKQTTSSSSASSDNGRIKASPLAKKLAEDKGVDIALIKGSGEGGRIIKRDVESF
DPASVQPAAQSGVAAPAAVGQESYTEEKVSQMRKTIAKRLAESKFSAPHFYLTMEINMDK
AIEARKSMNEIAPVKISFNDMVIKAVAASLKQHPKVNSSWLGDKIRYNEHVHIGMAVAVE
EGLLVPVIRFADSKTLSQISQEAKTLGGKAKNKELQPKDWEGNTFTISNLGMFGIEEFTA
IVNPPDACILAVGGIKETVIVKDGQMQVGNVMKVTLSCDHRVVDGAVGSGFLKTLKGLLE
DPVRILI