PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3952 (478 amino acids)

SeqID: Echvi_3952 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3952
MQLDKVVYQSEAAFEQYKITSLAERAAFLRKIADQLEAIKEALIPTACEESHLPEGRITG
ELGRTTGQIRLFAKYVEEGTWLEVTIDHGDPERTPAPKPDLRRMLVPLGPVAVFGASNFP
LAFSTAGGDSISALAAGCTVVYKGHPGHPKTSLMVFEAIQQAIAAAGLPEGVFQHVEGGI
SEGQTLVQHPAIKAVGFTGSFKGGKALFDLANSRPEPIPVYAEMGSINPIIAFESALANS
EQVAGQYAQSLTLGAGQFCTNPGVIFVPADMAEAFAQNTGKVLADAAGQAMLHEGIQTAY
HQSLDHLADTGGLKWIQKAAAKDAGHPALALTDLDTWIKSPSLQEEVFGPFGIVVAYDSI
AALLKAAKTLQGQLTITLWASESELTDQAALINTLQDKCGRLLFGGVPTGVEVGHAMQHG
GPFPATTDSRSTSVGVYAIKRFARPFAYQNCPDGLLPKELKEANPLDIIRTVDGEVVK