PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_3953 (303 amino acids)

SeqID: Echvi_3953 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 29336998: N-acetylneuraminate lyase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_3953
MNWNGVFPAVTTKFHGDGSIDYDTFFLNLEAQIDAGVSGVILGGTLGESSVLEDEEKIEL
TKKTKEKIAGRVPVVLNIAEGSTAKAIYWAKKAEELGLDALMLLPPMRYPSDHRETVTYF
KTVAQATHLPIMIYNNPVDYKTYVTLEMFDELMECENIQAVKESTRDVSNVTRMKTRFGD
RYKILCGVDTLTMESVLMGADGLVAGLVCAFPKETVVLFDLCKERRIEEALPIYQWFLPL
LELDIHPKLVQYIKLAEQMAGIGTENVRAPRLTLIGEERARVEKLIQTGLENRPELAEIK
TSI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory