PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4033 (362 amino acids)

SeqID: Echvi_4033 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 67470905: Glutamate 5-kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4033
MIHRKANTIVIKIGSNVLTQADGTPDTMRMKALVRQMVYLREQGQEIVLITSGAVAYGRT
STVFEEKTDPVIQKQILAAVGQIELIRQYKQLFGDHNTPIAQIMVTKSDFRDRKHFLNMK
NCLEGLLKNNIIPVINENDTVSVTELMFTDNDELAGLVAAMLDAKDLIILSNVEGIFKGH
PSDPEAVLIEKVDADTPSMANFISSSKSSFGRGGMLTKMNMAKKSADLGIGVTIANGKRE
DVLVDYFHNRLRCTYFEPSKAKQSPKKWIAHSEHYSTGEVIINSGAENALRSDKITSLLP
IGVLEIRGDFSKGDIIRILSEDGRKIGLGKSAYGAKVAAEKKGLSNQKPLIHYDYLYLHQ
DS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory