Running PSORTb v3.0 on Echvi_4038 FitnessBrowser__Cola:Echvi_4038 (955 amino acids)
SeqID: Echvi_4038 FitnessBrowser__Cola:Echvi_4038 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 2.00 Cytoplasmic 2.00 OuterMembrane 2.00 Periplasmic 2.00 Extracellular 2.00 Final Prediction: Unknown -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>Echvi_4038 FitnessBrowser__Cola:Echvi_4038 MSLTKLIYTFVMLVLLYACAPSAGENFPPENGITITLPSDDPYSPKQVRLEVITENIIRV TSSPLDTRPVNSSLMIIDQLPSPPAWEKTETADSVGLQTAKVQAWISKSTGEVTFKDASG KLILQEAKAGKAFGPPADDLEDDAVFSIQQRFKSPENEAFYGLGQQQTGLFNYKGYHVDL TQYNSVVAVPFMVSSRNYGILWDNYSITKFGDDREPMPLSELRLFDANGKEGFLTATYAN DPNRPNEGLKEQEGHIAYTFLDDLNKIPKDFDMANGTATWQGSLQARESGVHRFHMTYSG YVKVWADGQLLVDRWRESWNPGPLVFELPLDTEKATAFKIEWIPESTQSFLSVKFLPPDR YRTTETYAFRSEAGKMLDYYFVAGQDMDELISGYRQLTGKAQIMPKWAMGFWQSRERYKT QEELLSTVAEYRKRHIPLDNIVQDWSYWPEDAWGSHDFDPARFPDPVGMIDQVHDQYHAH IMISVWPKFYEGIEHYKQFDEKGWLYKQNILNRQRDWIGEGYISTFYDAFNPGARELFWK QINEKLYQKGIDAWWLDATEPDVLSNASIQHRKTLMNPTALGTATEYFNGYPLVNAKGIY HGQRATNPDDRVFILTRSAFPGIQRYGAATWSGDISARFDELEQQIPAGLNFSLSGLPYW TTDIGGFFVEDKYDRPDPKGEALEEWRELNTRWYQYGTFTPLYRSHGQYPYREVFNIAPE GHPAYRSIVFYNKLRYRLMPYIYSLTGKVHHDDYTIMRPLIMDFDHDPRVGQIKDQFMFG PSILVNPVYHYEATNRDIYFPKETGWYDLLTGEYQAGGVEKNIEAPYDKIPLFVKAGSII PFGPKIEYTDEKPADEITLYVYAGQNGYFELYEDQGSNYEYEQGQFSIIPLTYDENTKTL TIGAQEGEFEGMLTSRTFHVIYVQKDRPTGYKPDATTEKAIHYTGQSMALKLDEE
Lawrence Berkeley National Laboratory