PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4039 (925 amino acids)

SeqID: Echvi_4039 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4039
MSLDPYHIKKQLDTAKGSLNYWSLAALQEQGHKINELPFSIRILLENALRNYDDFAITKE
HTETLLNWKPEASDKDVPYKPARVLMQDFTGVPAVVDIASLRAEAVRKGKDPQKINPLIP
VDLVVDHSVQVDYFGTNYSYKKNVDVEYERNGERYEFLKWAQKSFDNFSVVPPGMGICHQ
VNLEYLAKGVIERDGNVFPDTLVGTDSHTPMVNGIGVVGWGVGGIEAEAALLGQPIYFIM
PQVVGLKLTGELPLGTTATDMVLTITELLRKHGVVGKFVEVFGPGLDTLTVPDRATISNM
SPEFGCTVTYFPIDDRTLDYMSKTNRSKDQIKLVEDYAKANMLWREDEESVKYSSLVELD
LGTVEPTVSGPKRPQDKILVRNFKEKFGELLEEVHGREYIPIDKRDKSRWFSEGGGQPVD
KPGDLPEDVEIATKTKNGLKTVEVKINNEEFALSDGSIVIAAITSCTNTSNPSVMIGAGL
VAQKARERGLDVKPWVKTSLAPGSKVVTDYLEASGLLDDLEALRFHVVGYGCTSCIGNSG
PLPKHIAHAVEENDLVVASVLSGNRNFEARVHPQVKMNYLMSPMLVVAYALAGRVDVDLN
EEPLGFDPNLEPVYLKDIWPSNDEIFEVMGKVLSPGDFDKNYGEIFEGNEQWKNLQAPSD
KVYNWSEKSTYIKEAPFFQGLSNEVPEPQNIQGARVLLKLGDSITTDHISPAGAFAESSP
AGQYLVGRGVEKKDFNSYGSRRGNDEVMVRGTFANVRIKNQLASREGGYTTHIPSGEEMT
VFEASEKYQKDDTPLVVLAGKEYGSGSSRDWAAKGTTLLGIHAVIAESYERIHRSNLVGM
GVLPLQFAEGQSASSLGLDGKEEITIEGITEGLTPLKNLKATAKKDGGAVVNFDVVCRLD
SEVEIAYYKNGGILHYVLREFLKQD