PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4081 (757 amino acids)

SeqID: Echvi_4081 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600239: malic enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4081
MAIKIRKEDALGYHSQGSPGKIEVVPTKPLSSQLDLALAYSPGVAEPCLEIAKQKENVYK
YTAKGNLVAVISNGTAVLGLGDIGPEAGKPVMEGKGVLFKKFAGIDVFDIEIDEKDPQKL
IQIIKSLEPTFGGINLEDIKAPECFEIEQALKQQMKIPVMHDDQHGTAIISGAALLNALE
IVGKKIEEIRLVVCGAGAAAVSCTRFYMSLGVKRENLVMVDIEGVIRSDRPDLDDIRKEF
STSRESLHTLSDAMKGADVFLGLSAGNIVSPEQIKSMAENPIVFALANPHPEIDYDLATA
TREDLIMATGRSDFPNQVNNVLGFPYIFRGALDVRATAINEEMKLATAHAIAKLAKEPVP
EIVNKAYGDDQLGFGRNYLIPKPLDPRLITTIAPAVAKTAMDTGVAQTAITDWETYELEL
QERIGIDQRLMSRVIARAKKHPKRVVFAEADNTKILKAAQLINDERICDPILLGNRETIL
KLIEEHSLDLSNVPIIDPYEEPERLEKFGNLLYNKRQRKGLTPFEAQKLMRDRTYFGAMM
VETGEADALISGLTKDYPKTILPALHVIGVKKDVDRVAGMYIMNSDKGPYFFADTTVNVD
PTADQIVEIIGLTADAVKFFDLEPKVAVLSYSNFGSAKGNTPTKTALATAKAKEKFPDLI
IEGEMQANVAINEAIQKENYPFSALANKKANTLIFPNLSSGNIAYKLLAEIGNAEAIGPV
LLGMNKPVHILQLGSSIREIINMVAIAVVDAQSHDNI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory