PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4197 (491 amino acids)

SeqID: Echvi_4197 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [15 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2499536: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4197
MGKTFSKKWSLILGPMVFIGLILLDPPSGMSEEALKVLAVTLWMAIWWIAEAVPIAVTAL
LPIVLFPITGAVEIGITTEAYGHKYIFLYMGGFILALAIERWGLHQRIALIIISLIGSNM
NSIMLGFMLATAFLSMWISNTATAVMMLPIGMAIVNQFAKVSDIYPDNREKEVGKALMLA
IAYSASIGGFATLIGTPPNLVLAGIIEELYDVKLSFLDWMKFGFPLSMLLLIICWKYLTT
YAFDCKKVDFPGGKQEINKMLKALGKISFEEKWVLIIFALTAAAWILRSFIQRLLPGIDD
AVIALMAAITLFVLPSKSGKRKLINWEEAVKLPWGIILLFGGGMALAKGFGITGLAEWIA
GKMGQMNGMSMILMILILVAMVNFLTEITSNLATTAMILPVLAPLAMSFNAHPFMLMVPV
TVAASCAFMLPVATPPNAVVFGSGYLKIPDMVKAGFWMNIFSILLVTIVSYYLLDAFWNF
EADVFSKVLIT