PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4222 FitnessBrowser__Cola:Echvi_4222 (484 amino acids)

SeqID: Echvi_4222 FitnessBrowser__Cola:Echvi_4222
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4222 FitnessBrowser__Cola:Echvi_4222
MSKLADIGLIGLAVMGENLVLNMESKGFSVAVYNRSTDKVDKFIQGRGAGKNFIGTHSVK
ELVDSLQKPRKVMMLVKAGDPVDSFIEQIIPHLEEGDIIIDGGNSNFTDTIRRTEYVESK
GFQYVGTGVSGGEIGALRGPSMMPGGSKSAWPHVKEIFQSVSAKVDGGVPCCDWVGADGA
GHYVKMIHNGIEYGDMQIITEAYQFMKDVLGMDYDEMHKTFKKWNSEELDSYLIEITADI
LAYKDEDGEPMVEKILDTAGQKGTGKWTGIEAMHLGVPLTLIAESVFSRFLSAQLELRDQ
ASQVFDAPAISFDGNKEAMLEDLKMAVYGAKIISYAQGYNLLMEASKEHNWELNYGDIAL
MWRGGCIIRSAFLGDIKKAFDKNPGLPHLLLDDFFKEKVQNAQAGWRKVCAAAVTNGIPV
PALSAALAYFDGFRTKRLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTGEGADTVST
AYNS