PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4679 (337 amino acids)

SeqID: Echvi_4679 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2492537: Cytoplasmic membrane associated cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    6.29
    Cytoplasmic            3.70
    Periplasmic            0.01
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4679
MDKANYILEGKNVAIGYRKGKYPLKVSEHLDFQLSAGKLTCLLGPNGVGKSTLIKTLMGQ
LPPLAGDITFAGIPLHQQHPRQLAQKISVVLTDRITAGNLTVQQLVALGRTPFTNWLGKL
SSEDQHIIKEALQATKTLYLKDQLISEISDGQLQKVMIARALAQDGQLIILDEPTAHLDL
INRYETMHLLREITKRQGKSILVVTHDLEIAVETADHLWIMQCGEPLTTGTPEDLIISDK
INLLTTGSGLAFDKNTGKIRLTSPRDLINIQGPPHLVQWLKLALLKNGITLPQRIVINVT
DAPPTFGITGDGYTETVHDIQSVISRLHERLDSDSHS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory