PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on Echvi_4683 (685 amino acids)

SeqID: Echvi_4683 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>Echvi_4683
MRPDLTKLSQAEPFMEAADRPRPDHVRYAAGIAPFLRGPYSTMYLTRPWTLRQYAGFSTA
EASNAFYKKNLEAGQKGLSVAFDLATHRGYDSDHPRVQGDVGKAGVAIDSVLGMKLLFDG
IPLDKMSVSMTMNGAVIPVMAFYIVAAEEQGVPLDQLKGTIQNDILKEFMVRNTYIYPPE
PSLRIIADIFAFTAKNMPAFNSISISGYHMLEAGATPELELAYTLADGLEYVRTGLKAGL
AIDDFAPRLSFFWGVGMDHFTEIAKLRAGRLLWAKLMKEFRPTHPKSLKLRAHCQTSGWS
LTEQDAFNNVARTTIEALAAVMGHTQSLHTNAFDEAFALPTDFSASIARNTQVILREEYG
LRKVVDPWGGSVLLEELTEDLVKKAWAHLQEVEKMGGMAKAIEAGLPKQMIEEAAARRQA
KVDQGKEIVVGVNRFLVDEEEDFDILEVDNEAVLKQQQARLSQLKNDRDAAAVARSLEAI
TQAAKSGEGNLLELSVEAARERATLGEISMAMEKVYGRHRAKNQVVSGVYSSEAGNDELF
KEALTLTARFEKLEGRRPRILIAKMGQDGHDRGAKVIASGMADMGFDVDIGPLFQTPEEV
AKQAVENDVHLVGASSLAGGHKVLIPQLIIALEEMGRPDILVVAGGVIPPHDYEFLKEKG
VLEVFGPGTVLTKAAIRIMSVLIEE