PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1006 (602 amino acids)

SeqID: GFF1006 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1006
MCGIVGVLGNHEAAPILVEALKRLEYRGYDSAGIATVNGGALDRRRAVGKLVNLSDLLVH
DPLPGKSGIGHTRWATHGAPTVGNAHPHRAGGVAVVHNGIIENFKELREELAQKGITFAT
ETDTETVALLCQSLIGDGKTPVEAARETVQQLEGAFALAFLFEGEADLMIAARKGSPLAI
GHGDGEMFVGSDAIALAPFTDQITYLEEGDFAVLTRNSLEIRDQRGAIANREKRQIQLAN
ARVDKDGHKHFMAKEIAEQPVAIDRALKAYMGDDGQLSLPAELDFTKIERLTMVACGTAF
YACMVAKYWFGQIARMPVEVDVASEFRYREPPVPEKTLALFVSQSGETADTLAALRYMEG
KAQQIVGLVNVPESSIARESDVILPLHAGPEISVASTKAFTCQLSILLLLALRAAEQRGL
PLPDGMPADLRALPGLIHQSLAAEKQITASARGLAEARDIIFLGRGQLYPLALEGALKLK
ELSYIHAEGYASGELKHGPIALIDEKVPVVVMAPRDALFDKTVSNMQEVMARGGKVILIT
DAEGAKIAGDGTHEVIVMPQVPDSLAPILYAVPAQQIAYYTAIAKGTDVDQPRNLAKSVT
VE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory