PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1016 (645 amino acids)

SeqID: GFF1016 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597208: methylcrotonyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1016
MFDKILIANRGEIACRVMETARAMGVRTVAVYSDADVTAKHVQMADEAVHIGGSAPADSY
LKGDVIIRVAQESGAQAIHPGYGFLSENPAFVDAVEAAGLSFIGPSADAIRKMGLKDAAK
ALMEKAGVPVVPGYHGANQDAEFLAGEAEKIGYPVLIKAVAGGGGKGMRLVEAPAEFSDA
LKSAQGEATTAFGNPDVLIEKYIQQPRHIEVQVFGDGTHAVHLFERDCSLQRRHQKVIEE
APAPGMTAEMREAMGEAGVRAAEAIGYKGAGTVEFIVDGSDGLRTDGFWFMEMNTRLQVE
HPVTELITGVDLVEWQLRVASGESLPAQQDDLTITGHAFEARLYAEDVPKGFLPATGTLT
HLSFPAECRADSGVRAGDTISPWYDPMISKVIVHGATRSVALSKLRRALERTEVAGTVTN
LAFLGALASHQGFGRGEVDTGLIARDLEALTAVGDMPVAHWIAAAQRALCLHKSGGDSGF
TLWAPLHRAVQLTHGEESLEITVEVLGPQAQRWQLDDSSHEVTFDGTCWRHDGHPLPNVA
EADGRLTVFARISSIFDCIDPLDRAGTAGGDTNVIEAPMPGLVKAVFAEAGAEVKEGDRL
AILEAMKMEHSLLAARDGVVAEVLASAGDQVEAGAALVRLEEADS