PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1097 (512 amino acids)

SeqID: GFF1097 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 6016136: Glycerol-3-phosphate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1097
MNPSTLPAPPLAEVYDVAVIGGGINGVGIAADAAGRGLSVFLCEKDDLASHTSSASSKLI
HGGLRYLEHYEFRLVREALAEREVLLAKAPHIVKQMRFVLPHRPHLRPAWMIRAGLFLYD
NLGKREKLEGSKSLKFGPDSPLKSEITKGFEYSDCWVDDARLVVLNAMAAREKGAHIHTQ
TRCISAHRSNGMWEMNMERADGSLFSIRARALVNAAGPWVAKFIKDDLKLDSPYGIRLIQ
GSHLIVPKLYEGAHAHILQNEDQRIVFTIPYLNHLTIIGTTDREYTGDPAKVAITEGETD
YMLKVVNAHFKKQLSRDDIVHTYSGVRPLCNDESDNPSAITRDYTLALSGGTGEAPILSV
FGGKLTTYRKLAESAMAQLAPYFTQMRPSWTAKASLPGGEDMTTPEALAEAIRSKFDWVP
SEIARRWSTTYGSRTWRLLEGVQSLADLGEHLGGGLYTREVDYLCAEEWATQPQDVLWRR
TKLGLFTTPAEQANVQRYLSTVEQNRSKIEAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory