PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1136 (436 amino acids)

SeqID: GFF1136 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1136
MALNLLYSNDRKGTYPNSWYAATATPLAPFAPLQGEARADVCIVGGGYTGLSAALHLAEA
GRSVILLEANRVGFGASGRNGGQLGSGQRMEQDGLESLMGEPDAAKLWHLAEDAKDLVKS
LIARHDIDCHLKPGIAHACFSKSDVSHEHRYVEHLQTRYGYGDITALDKAALQAICPSPA
YVGGSLDMGAGHLHPLAYALGLARAAAAAGVQICEGSEVLDIEDGAQIRLRTAEGQVTAD
HLILACNGYLGGLNRQVAARVMPINNFIAATEPLGADAAQVLARDVAVADSKFVVNYFRL
SHDGRLLFGGGESYGYRFPSDIAATVRKPMTEIFPHLRDVKIDYAWGGTLAITLKRMPYL
ARLGPNILSASGYSGHGVGTATHAGQLMALAVAGDGDGFDTMARVPAPAFPGGAAMRSPL
LALAMTWYALRDRLGI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory