PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1142 (236 amino acids)

SeqID: GFF1142 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141196: Lysine-arginine-ornithine-binding periplasmic protein precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1142
MKSLILGTAALALTAGIAMADTVRLGTEGAYPPYNFLNDDGQVDGFERELGDELCKRAEL
DCEWVTNDWDSIIPNLLSGNYDTIIAGMSITAERKEVVNFTTGYTRPSPSAYAAMSADVD
VNSAVVAAQASTIQAAHVASTGATLVEFPTPDETVAAVKAGEVDAVMADKDFLIPIVGET
EMEFVADDVLLGDGIGMAFRKSDDELRGKFDVAIESMKADGSLNALLEKWEIEGQF