PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1151 (766 amino acids)

SeqID: GFF1151 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1151
MMDKFGKSQPVRRVEDIRFLTGQGRYLEDAAPVGALRAWVLRSPVAHGTITHLDLDMARE
AEGVQAILTLADLEAAGINVGMDGAVVDNRDGSKAAAPERPMLVRDRVRFVGEPIAVVIA
ETLEQARDAGEMIELDIDDLPAKVDLTAGGEQLHAEAPDNRAFDWSMGDEAATEAAFASA
AHRVALQVEDNRIIVNTMEPRGCFATWAEGRLQFTYGGQGVWAMKKQLSDKLGLASEAVH
VTTPDVGGGFGMKAMPYPEYFAVAHAARLLGGPVFWMSDRSEAMLSDNAGRDLTSLAELA
FDADLRITGYRVHSHCNLGAYNSHFGQPVQTQLFSRVLAGVYDIDTTWLRVEGIYTNTAQ
VDAYRGAGRPEAIYVLERVMDHAARELGVDPWELRRRNFIRADQFPYKTATDETYDVGDF
HQLLTLTEEAADLAGFAQRKAADALRGNLRGVGLCYYIESILGDPSESAEVAFEEEGRVS
IYVGTQSNGQGHETVYAQFLADQTGIPAADITVVQGDSDRIAQGGGTGGSRSVTTQANAT
LAAVDVMIEAFTPFLAEQLGVAPASVVFDGEQFSAPGSNQRPTLVEAAEMARAQGRHELL
RHTARAKLPGRSFPNGAHVAEIVIDPETGVSHVDRYTVVDDFGNLINPLLAEGQVHGGVA
QGLGQALLERVVYDADGQLLTASFMDYALPRAADVPMIDVGFAPVPSTQNPMGMKGCGEA
GTVGALAAVANAVQDAVWDRGVRQVEMPYTPLRLWEALRNVADAAE