PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1166 (504 amino acids)

SeqID: GFF1166 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599529: probable fumarase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1166
MTTVIRQDDLIESVADALQFISYYHPKDFIDGVYEAYQKEESQAAKDAMAQILINSRMCA
EGHRPLCQDTGIVTVFVNIGMNVQWDCELPLDDVINEGVRRAYTHPDNVLRASILDDPDG
KRKNTGDNTPAIIHYKMVPGDTVEVHVAAKGGGSEAKSKFAMLNPSDSVVDWVLKMVPQM
GAGWCPPGMLGIGIGGTAEKAMEMAKESLLDPIDIHDLKARGASNRAEELRLELFDKVND
LGIGAQGLGGLTTVLDVKVKDYPTHAANKPVAIIPNCAATRHAHFTLDGTGPSLQTPPRL
EDWPEITWEVGDNVRRVNLDTVTPEDVKDWQPGETVLLSGKMLTGRDAAHKKMVDMIEKG
EELPVDLKGRFIYYVGPVDPVREEVVGPAGPTTATRMDKFTHTMLEKTGLTGMIGKAERG
QVAIDAIKEFGAVYLMAVGGSAYLVSKAIKNAEVVAFPELGMEAIYEFEVEDMPVTVAVD
SRGSSVHQTGPAEWHEKIIAAKAV