PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1179 (436 amino acids)

SeqID: GFF1179 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1179
MDARAIIASLRRGDTPSDADLRWFAEGLANGTVSDAQAGAFAMAVCLQGLGVEARGALTL
AMRDSGDVLRWDLDGPVLDKHSTGGVGDCVSLLLAPALAECGAYVPMISGRGLGHTGGTL
DKMEAIPGVSIQVSEQDLVAMMQGVGCAIVGATAQIAPADKRLYAIRDVTATVDSLDLIT
ASILSKKLAASTDALVLDVKIGSGAFMKTLEEAEALALSLTETANAAGCRTSALITDMNQ
PLAPALGNALEVAEVMRVLTGVSGQGGALTELTAEQGGVLLAHGGLAADAEAGAEMIRKA
IASGAVAERFARMVAAMGGSSDFAETWQTILPTAPVQRRIKVEQTGYVSAIDGEALGLAV
VQLGGGRMIESDVVDPAVGLSELTPLGQKLSVGDQLGIVHAADEAAADVAETRLRAAYQL
SDAAPDLPPLIYKRIS