PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1244 (556 amino acids)

SeqID: GFF1244 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1244
MTMLKNPSKKYRAFPAIDIPDRTWPSKTITQAPIWLSSDLRDGNQSLIEPMDAAKKMRFF
KTLVQVGIKEIEVGFPSASQTDFDFVRELIEGGHIPDDVTIQVLTQAREDLITRTFESLK
GAKQAIVHYYNATAPSFRRIVFNQDKAGVVNIAVNAAQIIKRLAAQNPETAWRFEYSPEI
FSSTEPEFAVEVCNAVIEVFQPTPEQKLILNLPATVEAATPNIYADQIEWFCRHVDRRDS
VLVSLHTHNDRGTGVAATELGLMAGADRVEGCLFGNGERTGNVDLVTVALNMYTQGIDPQ
LDFSDIDAVRKVVEECNQLPVHPRHPYVGDLVHTAFSGSHQDAIRKGFSQQDPDSIWEVP
YLPIDPADIGRSYEAVIRVNSQSGKGGITFLLEQEYGISLPRRMQIEFSQVVQKETDRLG
LEMSAKQIYALLEAEYLQATAPYTLKGHRLQEENGTSAVDVEVAADGEVVHWRGIGKGPL
EALVAALPVKLEIMDYHEHSIGAGSNAKAAAYIEVRLDGERPLHGIGIDENITTASIRAL
FSAMNRALREAQDKAA