PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1279 (695 amino acids)

SeqID: GFF1279 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1279
MDTYFLIFKLGYYRCGGRKWFDTSRCALWCAIPRTDWREGHKMTQESDSKAYAPSEETVA
RAHVNAAQYDEMYAASMQDPEGFWRQQAERIDWIKPFTQVKDVDFTLGNVSINWYADGTL
NVAANCIDRHLDTRGDQTAIIWEPDSPDEAAQHISYKQLHTRVCRMANVLETMGVRKGDR
VVIYLPMIPEAAYAMLACARIGAIHSIVFAGFSPDALAARVNGCDAKVLITADEAPRGGR
KTPLKSNADAALLHTKDTVKCLVVKRTGGQTTWIDGRDYDYNEMALEADDYSKPAEMNAE
DPLFILYTSGSTGQPKGVVHTTGGYLTYAAMTHEITFDYHDGDIYWCTADVGWVTGHSYI
VYGPLANGATTLMFEGVPTYPDASRFWQVCDKHKVTQFYTAPTALRALMGQGNEWVEKCD
LSSLRTLGTVGEPINPEAWNWYNDIVGKGKCPIVDTWWQTETGGHLMTPLPGAHATKPGA
AMKPFFGVAPVVLDPQSGEEITGNGVEGVLCIKDSWPGQMRTVWGDHERFEKTYFSDYKG
YYFTGDGCRRDEDGDYWITGRVDDVINVSGHRMGTAEVESALVAHAAVAEAAVVGYPHEI
KGQGIYCYVTLMNDREPSDELVKELRTWVRTEIGPIASPDVIQWAPGLPKTRSGKIMRRI
LRKIAENDFGSLGDTSTLADPSVVDDLIANRADKG