PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1305 (433 amino acids)

SeqID: GFF1305 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1305
MYLKSALRAATALTVFASTAAFADTITIATVNNGDMIRMQGLTEDFTAKTGHEVEWVTLE
ENVLRQRVTTDISAKGGQFDIMTIGMYETPIWGKNGWLVPLNDLPADYDVDDILPAMRGG
LSHDGTLFAAPFYGESSMIMYRTDLMEKAGLEMPAAPTWDFVADAARQMTDKDNETYGIC
LRGKAGWGENAAFITAMSNSFGARWFDENWAPQFDSEAWSNTLNFYINLLNDAGPPGASN
NGFNENLSLFQQGKCGMWIDATVAASFVTNPNDSTVADKVGFALAPDTGLGKRSNWLWAW
ALAIPAGTQKEAAAKEFIQWATSKDYIELVAENEGWANVPPGARISLYENANYKDIPFAK
MTLESILSADPNNPTVDPVPYVGIQFAAIPEFAGIATQVGQEFSAALAGQQTAEEALAKA
QALTADEMEAAGY