PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1336 (464 amino acids)

SeqID: GFF1336 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932723: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1336
MSDTRTETDSFGPLEVPANKYWGAQTQRSIMNFPIGWEKQPVAIVRALGVIKQACAMANK
ASGKLDARIGDAVIQAAGEVIEGKFDDNFPLVVWQTGSGTQSNMNSNEVIANRAIEILGG
VIGSKDPVHPNDHCNMGQSSNDTFPTAMHIATAMMVRDVLVPGLTKLAEGLEAKAEAFKD
IIKIGRTHTQDATPLTLGQEFGGYAHQIRQGLARVEAAMPGIYELAQGGTAVGTGLNTQK
GWGETVAANMAEITGLPFVTAPNKFEALAAHDAMVFLSGALATIAGSCYKIANDIRFLGS
GPRSGLGELILPENEPGSSIMPGKVNPTQAEALTQVAAHVMGNDAAIKFAGSQGHFELNV
YNPMMSYNLLQSIQLLGDAADSFTERMLNGIEANEPRIDKLMKESLMLVTALAPTIGYDN
ATKVAKTAHKNGTTLKEEAIALGFVDEASFDAVVRPEQMIGPKD