PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1345 (763 amino acids)

SeqID: GFF1345 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1345
MKKLCLLGLVATLATHPVWAETKPAALKDKDAFVSDLLKQMTLDEKIGQLRLISIGPEMP
RELIRKEIAAGRIGGTFNSITRPENRPMQDAAMRSRLKIPMFFAYDVIHGHRTIFPISLA
LASSWDMDAIGRSGRIAAQEAAADSLDITFAPMVDISRDPRWGRTSEGFGEDTYLVSRIA
EVMVKAFQGVSPANADSIMASVKHFALYGAVEGGRDYNVVDMSPVKMYQDYLPPYHAAIK
AGSGGVMVALNSINGVPATANTWLMNDLLRKDWGFKGLAVSDHGAIFELIKHGVAKDGRE
AAKLAIKAGIDMSMNDSLYGKELPGLLKSGEIEQSDIDNAVREVLGAKYDMGLFKDPYLR
IGKAEDDPADTYAESRLHRAEARDIARRSLVLLKNQNNTLPLKKSATIALVGPLAKAPID
MMGSWAAAGKPEQSVTLLDGLNAVIGEKGKIIYARGANITQDKAVVDYLNFLNFDAPEVV
DDTRPAQVMIDEAVKAAKEADVVVAAVGESRGMSHESSSRTDLNIPQSQRDLIKALKATG
KPLVLVLMNGRPLSILEENQQADAILETWFAGTEGGNAIADVLFGDYNPSGKLPITFPRS
VGQIPTYYNHLTIGRPFTPGKPGNYTSQYFDDTTGPLFPFGYGLSYTTFSLSDMALSSTT
LNKTGKLDASVTVKNTGKVDGETVVQLYIQDVAGSMIRPIKELKNFQKVMLKAGEERTLH
FTITEEDLKFYNTQLKFAAEPGEFNVQIGLDSQDVQQQTFELL