PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1383 (370 amino acids)

SeqID: GFF1383 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595941: probable enoyl-CoA hydratase/isomerase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1383
MNLHFEELTGSDGARIGIASLDAETSLNALSLPMILALGERLDTWAKDPNIVCVLLRGNG
PKAFCAGGEVRSLVQACREQPGAVPALAAQFFAAEYRLDYRLHTYPKPLICWGHGYVLGG
GMGLLQSAAVRIVTPSSRLAMPEISIGLYPDVGASWFLSRLPGKLGLFLGLTGAHINGRD
ALDLGLADRFLRDDQQDELLDGLLQLNWQEQTSMQLNSLLKALAQEAVEQQPQAQWLPRR
AQIDEWLDVGDVRCAWRALSQLREHADPLFSRAGKTLSEGCPLTAHLVWEQIQRGRHLSL
AQVFQMEYTISLNCCRHPEFSEGVRARLIDKDQTPHWHWPDINAIPDAVVQAHFNKAWEG
RHPLADLSDY

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory