PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1397 (742 amino acids)

SeqID: GFF1397 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1397
MTSSEPLFKRVAVIGLGLIGGSLACAIRRKGLAVTVVGADHRTEELQLGKELGVIDQAAS
TVSDAVRGADLVVLAVPVRATRAVLEQIRPALEPDAILTDVGSTKSSFVADVEAVFGGLS
PLVIPGHPIAGSEKSGIRAANPELFANHKVILTPPDNVSQPHLARLKGLWEGCGATVLTM
SVAYHDEVLAATSHLPHLIAFSLVDTLAGEDENMDIFRYAAGGFRDFTRIAASDPVMWHD
IFLSNRDAVLRVIDHFTHDLEQLRTAIANQDSATLLRVFSRAKAAREHFSKMLSGQAYVT
NNSEKQVTFRLQPGGAITGDIRVPGDKSMSHRSIMLGALADGVTEVKGFLEGEDSLATLQ
AFRDMGVTIEGPDDGFVRIHGVGMHGLQAPRGPLYLGNSGTAMRLFAGLLAAQPFDSELT
GDASLSGRPMGRVADPLRAMGAVIDTAEGGRPPLKIRGGQKLSGIHYEMPVASAQVKSCL
LLAGLYAEGSTSVTEPAPTRDHTERMLAGFGYHVHRDGATASVSGGGKLTATNIDVPADI
SSSAFFLVAASIAPGSNLILRHVGMNPTRVGVINILNQMGANIEILDEREIGGEPVADLR
VRSAELQGIDIPEDQVPLAIDEFPVLFIAAACANGRTVLRGAEELRVKESDRIQVMADGL
AALGVETTVTPDGIIIDGGQTIGGGTVNSHGDHRIAMSFAVASLRAAGDITVNDCANVAT
SFPGFVELAQGTGINISAEGAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory