PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1428 (440 amino acids)

SeqID: GFF1428 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2851664: Inner membrane transport protein yjjL]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1428
MATIKKASLRSIHRHSWVSLLVCWMIWILNAYDREIVLRLGPTISKHFDLSADQWGTVAT
VVMLALALLDIPGSMWSDRYGGGWKRARFQVPLVLGYTAISFLSGFKALSGNLATFIALR
VGVNLGAGWGEPVGVSNTAEWWPVERRGFALGAHHTGYPIGAMLSGIVASFVITVFGEEN
WRYVFYFAFVVALPLMIFWARYSTAERISALYVDIAAKGMTPPDNAPASSVKGEAWRTFV
ATLRNRNIALTAGNTMLTQVVYMGVNIVLPAYLYNIAGLSLAESAGMSVVFTLTGILGQL
VWPSLSDIIGRRTTLIICGLWMAASVGAFYFANTLTLIVVVQLLFGLVANAVWPIYYAVA
CDSAEPSATSTANGIITTAMFIGGGLAPVLMGSLIAMGGGWTTLHGYTVCFFVMAGCALG
GALLQLFSHRPQALVVQLDS