PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1502 (391 amino acids)

SeqID: GFF1502 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 21542067: Formyl-coenzyme A transferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1502
MIRPLSDIVVLDLTHVLAGPYASMTLRDLGARVIKVERPGHGDDTRAFPPFKDGDSAYFS
TINHGKESIALDLRAEEDRGIFEQLLTQADVILENFRPGVMERLGYGWEALHARFPKLVY
GAVSGFGHTGPDRLRPAYDMVVQARGGVMSITGERDREPVRVGASIGDIAAGMFLCQGVL
AALYAVRGGAPGQKVDIAMLDSQLALLEHAVAITSVTGEAPRPSGARHPSITPFETFHAS
DGLFVIAAGNDTLFATLCTALDLPLATDARFASNQARCENARLLKRLIEAVTLDQPASHW
IDRLQRAGVPTGPIQSVAEVMRDPQILARNMLVDVCDQEGTPRFKAAGNPVKLSALPDET
TRPPAPMLDEHRAQILNWLGEIASGPPVNDT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory