PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1551 (406 amino acids)

SeqID: GFF1551 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 45593149: Crotonobetainyl-CoA dehydrogenase (Crotonobetainyl-CoA reductase)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1551
MTDRPALRAKDAPDLGQFNWDDPLRLDDQLSEDERMIAASARSYAQEKLQPRVLNAYENE
ETDPEIFREMGEMGLLGTTIPEQYGGLGAGYVSYGLVAREVERVDSGYRSMMSVQSSLVM
YPIYAYGSEEQRQKYLPKLSSGEWIGCFGLTEPDAGSDPAGMKTRAEKTDGGYRLTGSKM
WISNAPIADVFVVWAKSEAHGGKIRGFVLEKGMKGLSAPKIANKASLRASITGEIVMDGV
EVGDDALLPHVEGLKGPFGCLNRARYGISWGAMGAAEACWHAARQYGLDRKQFGRPLANT
QLFQLKLANMQTEITLGLQASLRVGRLMDEANAAPEMISIVKRNNCGKALEIARHARDMH
GGNGISLEFGVIRHMVNLETVNTYEGTHDVHALILGRAQTGLQAFF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory