PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1554 (424 amino acids)

SeqID: GFF1554 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1554
MTDRKATLSVGDKSIELPVYSGTVGPDVIDVRGLVQEGVFTYDPGFVSTAACESAITYID
GANGVLLHRGYPIEQLAEHSDYLEVCYLLLHGELPSAEENQKFHDTIKNHTMLHDQMRNF
FQGFRRDAHPMAIMCGVVGALSAFYHGEMDVASQEQREITAHRLIAKMPTIAAWCYKYAI
GQPFIYPRNDLSYSENFLQMMFGVPCEEYKPNPILAKAMDKIFILHADHEQNASTSTVRL
AGSTGANPYACIASGIAALWGPAHGGANEAVLDMLAEIGDESNIEKFIAKAKDKDDPFRL
MGFGHRVYKNFDPRAKVMAETAHEVLTELGLENDPLLKIAQRLEKIALEDEYFVKRKLYP
NVDFYSGLILKAIGIPTSMFTVIFALSRTIGWFSHWNEMVSGDYRIGRPRQLYTGSDSRD
YPAK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory