PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1599 (777 amino acids)

SeqID: GFF1599 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1599
MSADDNLMIANVSRRRFLMGLAGGSALVLAARWDVALAGNEKAQFGAGAMPGGWVDDPNV
FIHIDADGLVTIVNNRSEMGQGIRTSLVMVGADELGADWDQVRVEQAEGDHDKYGNQNTD
GSRSMRHWYQPMRRAAAAARQMLEQAAANEWGVPVSEVQAGVHTIVHRPSGKELGFGELA
AKARELDVPGRNALVLKRDDELRFVGKETGLINGELKSAYPKAIDGEDIVTGKAVYGADV
PFEGLLYAVIARPPVYGATVGDFDDTEALKVPGVEKVLKVEGTGQPAGFSPLGGIAVVAS
NTWAAMEGRKALKIDWNLEPAGDNASYTSATYRESLEKAAQQPGKVVRQHGDLDTALENA
DKRVSATYYMPHMAQAPMEPPVATVRIKDGKAEVWAPVQNPQATRDTVAGRLGLDAENVT
VHVTLLGGGFGRKSKPDFAIEAASIAEAFKGRPVRLQWSREDDIHHAYYHAVSVDYLEAG
LDNNGQATGWLHRTLSPSIGSLFAPDPKHKGEFELGMGFNTMPFSVPALRLENPPAPAHV
RIGWFRSVYNLPHAWAIQSFAHEMAVAAGKDHRDYVLDLLGPDREIHNLTVGDGWNYGED
PDLYPIDIGRMRNVIERVTREADWGKSTGKNRGLGLAFHHSFVSYTAIVFDVEVDDQGEL
TIHRADIAFDCGPQANPERIRSQLEGAIVMGIGIALQSEVTFEDGVAQQGNFDKYLIPRM
PDAPKTLRVHLVDNPDEAMGGVGEPGLPPVAPALCNAIYAATGKRIRRLPVGDQLKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory