PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1626 (464 amino acids)

SeqID: GFF1626 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 11135401: Soluble pyridine nucleotide transhydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1626
MAVYNYDLVVLGSGPAGEGAAMNAVKAGRKVAVVDNRPLVGGNCTHLGTIPSKALRHSVR
QIMQYNTNPLFRQIGEPRWFSFPDVLKSAEKVISKQVTSRTGYYARNRIDTFFGTASFSD
EQSVEVVCLNGMVEKLVASQFVIATGSRPYRPADVDFSHPRIYDSDTILTLSHTPRRMII
YGAGVIGCEYASIFSGLGVLVDLIDNREQLLSFLDDEISDALSYHLRNNNVLIRHNEEYE
RVEGLENGVILHLKSGKKIKADAFLWSNGRTGNTDKLGLENIGLKANSRGQIQVDEHYRT
EIGNIYAAGDVIGWPSLASAAYDQGRSAAGSIVENDSWRFVDDVPTGIYTIPEISSIGKN
ERELTQAKIPYEVGKAFFKSMARAQISFEPVGMLKILFHRETLEVLGVHCFGYQASEIVH
IGQAIMNQKGPANSIKYFVNTTFNYPTMAEAYRVAAFDGLNRLF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory