PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1674 (431 amino acids)

SeqID: GFF1674 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1674
MTDTKKTAQLSLNGETYELPIFSPTTGPDVLDIRKLYGQAGVFTYDPGFTSTASCDSTIT
YIDGGKGELLHRGYPIDQLASKSHHLEVCYLLLYGELPTAAQLEDFETRVTRHTMVHEQM
HNFFRGFRRDAHPMATLVGVVGAMSAFYHDSTDINDPWQREVAAIRLIAKLPTIAAMAYK
YSIGQPFVYPRNDLDYAANFLHMCFSVPAEEYHVDPILARAMDRIFILHADHEQNASTST
VRLASSSGANPFACIAAGIACLWGPAHGGANQACLEMLKEIGSVDRIPEFIERAKDKNDP
FRLMGFGHRVYKNTDPRAKVLKQSADEVLELLGVENNPLLQVAKELERTALNDEYFIEKK
LFPNVDFYSGIILEAMGFPTSMFTPIFALSRTVGWISQWKEMIADPQNKIGRPRQLYLGE
TARDYIDIESR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory