PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1761 (482 amino acids)

SeqID: GFF1761 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [14 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2499537: Inner membrane protein ybhI]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1761
MSDSPQNKGAAIAASIGLFLGPLLLLLCILTEPPADLSRTAWLTVGMAALMAVWWSTEAI
PIPATSLLPILLIPVLGIDTLAKATAPYANPTIFLFLGGFLLGLAMQRWNLHKRIALATL
LAVGSAPSRQIAGFMIATAFISMWVSNTATSIMMLPIGLSVISLLVAGSDKRDGERFAIA
LLLGIAYAASVGGIATLIGTPPNALLAAFLRENYDVHIGFGQWMLLGLPVSLGMLLFIWW
WLTRGGFTLSGGDSRAMLEKEMAALGPMSKAEKMVAVVFSLAALAWIFQPLLAKHVNGVN
DTSIAMAAALSLFLIPVDLRQRVFLMDWEQANKAPWGVLLLFGGGLSLAGVIGASGLAQW
IAQSLGGFGALPLILMIGLVALVITFLTEITSNTATAAAFLPLLGALAVAQGLSPEMLAI
PAAIAASCAFMMPVATPPNAIVFGTGQMHIQSMIKAGFAINLFGVALVTLLCYGLVGLIW
AS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory