PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1775 (354 amino acids)

SeqID: GFF1775 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3024771: Tartrate dehydrogenase/decarboxylase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1775
MTKTYRIAAIPGDGIGKEVLPVGRRVIDLVAQKHNFTVDWTEFDWSCERYHDTGRMMPED
GIEQMKAFDSIYLGAVGFPGVPDHVSLWGLLIPLRRELDQYANVRPVRLLKGISSPLAGR
GADDIDMIIVRENVEGEYSEIGGRVYQGTEHEAAIQESILTRRGTDRIMDYAFNVAKTRK
RKHVSSATKSNGIIHTMPFWDERFAAAAERHPAIGTAQFHIDIMTANFVLHPDWFDVVVA
SNLFGDILSDLGPAVAGSIGIAPSANINPEGKYPSMFEPVHGSAPDIAGKGVANPVAAVW
TAAMMLEHLGEANAAADIEQAIETSLASPDTKTRDLGGTADTAGSEAAILAALS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory