PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1835 (1232 amino acids)

SeqID: GFF1835 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1835
MTDRTTRLDQLHKALQERIVILDGGMGTMIQNLKLDEKAFRGDRFADYEREVQGNNDLLN
LTQPALLRNIHADYLDAGADIIETNTFNSTQLSQADYGLEAIARELNVAAAELARQIADE
YTAKNPEKPRFVAGAVGPTSRTASISPDVNNPGYRNVDFQTLVDNYYEAVGGLVEGGCDL
ILIETIFDTLNAKAAIYATQQYFEDSGITLPIMISGTITDASGRTLSGQTTEAFWNSVAH
AKPISVGLNCALGADALRPYVEELSAKAETYVSAHPNAGLPNEFGEYDQTPEEMAEIIEG
FARDGFLNIIGGCCGSRPDHIEAIAQAVSKYPPRKIPERPKALRLSGLEPFTGDDNVLFI
NVGERTNVTGSKRFLRLIKEEQYEEALSVARDQVENGAQIIDINMDEGMLESKEVMVTFL
NLVASEPDISRVPIMIDSSKWDVIEAGLRCIQGKAVVNSISLKEGEEEFVKRARDCMRYG
AAVVVMAFDEQGQADTYERKTEICKRSYDVLTGIGFNPADIIFDPNIFAIATGIEEHNNY
AVDFINATRWIRENLPHASISGGVSNVSFSFRGNDVVREAIHSVFLYHAIKAGMNMGIVN
PGQLVIYDEIDPELKELVEDVVLNRRDDSTDRLLEIAERYKGKGGKTQEEDLAWREWPVE
KRLEHALVKGITTYIVDDTEACRQRATHPIEVIEGPLMDGMNVVGDLFGDGKMFLPQVVK
SARVMKQAVAHLIPYIEAEKTEDQKAKGKILMATVKGDVHDIGKNIVGVVLQCNNYEVID
LGVMVPCDKILAAAKEHDVDLIGLSGLITPSLDEMVHVAREMQRLDFNIPLMIGGATTSK
AHTAVKIEPQYKNDIALYVSDASRCVNVASQLLSKNAKPEFVEAARTEYDEIRERRKNRG
DRTKLVSLKEARDRAPDISFEGYQPPKPAFTGIRVFEEYDLNELVDYIDWTPFFMSWDIS
GKYPAIFDDPKRGEAARHLFDDAQKILHRMIDEKRVSARGVIGFWPANRRGDDVVLYTDE
SCTEELTTLHHLRQQDEKAPGKPMMALSDFVAPEGSGTVDYVGGFAVTTGIGAEEFSVEF
KDANDDYNAIMVKALADRLAEAFAERMHERVRQEFWGYAADEKLANDDLIKERYRGIRPA
PGYPACPDHTEKATLFSLLEATDTAGIELTEHFAMFPTAAVSGWYFAHPESKYFAVGKIG
ADQVEDYAERKGISKAEAERWLAPSLAYDPAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory