PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1925 (427 amino acids)

SeqID: GFF1925 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1925
MPNKGYPASYYAATANSATARSELQDNKQVDVCVIGAGYTGLSTALFLLEKGYSVAVLEA
AKVGFGASGRNGGQIVNSYSRDLDSIERTASAAAAKLIGEMAFEGGRIIRERVARYDIQC
DLKDGGVFAAFNQKQMLHLETQKALWERYGYQHLELLDDRGIRQVVACDRYVGGMLDKHG
GHIHPLNLALGEAAAVESLGGTIHEHSPAIRIERGETPLVHTPKGTVRAKFVVIAGNAYL
GNLVPELAAKSMPCGTQVIATEPLSEELAHSLLPQDYCVEDCNYLLDYYRLAADKRLIYG
GGVVYGARDPADIESIIRPKMLKTFPQLEKVKIDYAWTGNFLLTLSRLPQVGRLGGNIYY
SQGCSGHGVTYTHVAGKVIAEALSGQAERFDAFASLPHYPFPGGQRLQVPLSALGAMYYN
LRDRLGF