PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1943 (747 amino acids)

SeqID: GFF1943 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1943
MNHARHAQQPSPILNRLVVIGLGLIGGSFAKGLREAGLCREVVGFDLDARSRELAVELGV
VDRCADTLAEACHGADVIQLATPILALERLLGELAKLELGGAVITDVGSAKGNVVRCARN
VFGEMPSRFVPGHPIAGSELSGVTAANSTLFRRHKVILTPLENTDPQALALVTKLWSALG
ADVEHMGVAHHDEVLAATSHLPHLLAFGLVDSLAKRHENLEIFRYAAGGFRDFTRIAGSD
PVMWHDIFLANREAVLHTLDDFRADLDALRAAVDEGDGHRLLGVFTRAKAAREHFSKILA
RRAYVDVMHSNDLVFLANPGGSLTGHLRVPGDKSISHRSIMLGSLAEGTTEVEGFLEGED
ALATIQAFRDMGVVIEGPHQGRVTVHGVGLHGLKAPPGPIYLGNSGTSMRLLSGLLAAQP
FDTTLTGDASLSKRPMNRVAKPLREMGAVIETAPDGRPPLTIRGGQRLSGMHYEMPMASA
QVKSCLLLAGLYAAGQTSVTEPAPTRDHTERMLRGFGYPVTVKGSTALVEPGHKLQATHI
EVPADISSAAFFMVAASIAQGSEIVLEHVGVNPTRTGVIDILKLMGGDISLENPREVGGE
PVADIRVRGAQLKGIDIPEDLVPLAIDEFPVLFVAAACAEGRTTLRGAEELRVKESDRIQ
VMADGLQTLGVKAEPTPDGIVIEGGAIGSGEVWAHGDHRIAMSFSVAALRASGPVRIHDC
ANVATSFPNFLALAQRAGMQVHSEGDS