PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1957 (632 amino acids)

SeqID: GFF1957 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597280: probable asparagine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1957
MCGIAGFLRTGTLPDREQHHLWAERMGQAIAHRGPDANGVHIDQDVALVHQRLSILDLSS
AGNQPMASSCGRYIIVFNGEIYNFRSLREGLEQDGFSFKTQTDTEVLLALYARHGESCLR
QLNGMFAFAIWDAKTKSLFIGRDRLGKKPLYYTDTDGQFFFGSEIKALFATPVVRPALRP
DAIKDFFVYQYIPDPKTIYANVHKLPPGHCMEVCEGRISVRKYWDLSFRPVEGRTVSDIK
AGLYDVIDEAVRLRMISDVPLGAFLSGGIDSSAVVGLMAGRSSQPVTTCTIGFDDEKFDE
IKYADLVARQFKTDHHVFTVKETVADNLVGISRFFDEPFADPSFVPTFFVSQLARTQVTV
ALAGDGGDENFAGYSKYRTDAIENRIRSLFPPALRHSLFPGLSRLAGHIPGPLGKKASSL
LGTVALDPDLGFFTSNCFFNPRVWKRVVSPEFAALTDDYDPADITRHHYQEAPAEDHLSR
ILYTDIKTYLPGDILVKVDRMSMANSLETRAPLLDYRVVEYAAGIPSALKLKGNCKKHVL
KECFSDLLDEDILYRKKMGFSVPLAQWLRSEIRAIAEPLLTGPDSGLSRYFRMEQVRALW
QAHLSGDNRFTQELWSMVVFALWYQHYKDFVR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory