PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1971 (494 amino acids)

SeqID: GFF1971 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595989: propionate catabolic protein PrpD[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1971
MSATFDLNERPDYDEVLQKIADYVLTYEITSEEAWNTARYCLMDTLGCALLALRFPECTK
HLGPIVEGTMVPHGARVPGTPYRLDPVKAAWDIGCNVRWLDYNDTWLAAEWGHPSDNLGA
ILAVADHLSQKRVAEGKEPLTMRTVLEAMIMAHEIQGVLALENSFNRVGLDHVVLVKVAS
TAVASRLMGADREQLLSALSHAWVDGQSLRTYRHAPNAGSRKSWAAGDATSRAVRLADIA
MRGEMGVPGVLTAPQWGFYDVLFSKTNKDQKLKPEDKRQFSLPQEFGSYVMENILFKISF
PAEFHAQTAAEAAVILYPEVKDRLNEINKIVITTHESAIRIISKVGKLANAADRDHCLQY
MAAVPLAFGSLTAEHYEDSFHRANPIIDELRDKMEVVEDERYTREYLEPEKRSIANAIQV
FFNDGSNTDKIAVEYPIGHRRRRKEGMPLLEEKFLSNLKTRLPSKRCDTVLKMCQDPEKL
ENTPVHEFMNLLLI

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory