PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1974 (376 amino acids)

SeqID: GFF1974 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3123196: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1974
MAEAKQLSGAGLRGQVAGETALCTVGKSGAGLTYRGYDIADLAEKAQFEEIAYLLLRGKL
PNRQELDAYKKKLQSLRGLPAALKTVLEQIPKDAHPMDVMRTGCSMLGNLETEEDFSEQD
DKIDRMLAVFPSIITYWYRFAHEGVRIETESDVDSIGGHFLELLHGKKPSELHERVMNVS
LILYAEHEFNASTFTARVCASTLSDIHSCVTGAIGSLRGPLHGGANEAAMALIQKFKTPE
EAEEGLMGMLERKEKIMGFGHAIYKESDPRNAIIKQWSKKLAEEVGDTVLYPVSERCEAV
MWREKKLFCNADFFHASAYHFMGIPTELFTPIFVMSRVSGWTAHVKEQRENNRIIRPSAD
YTGPADAKWVPIEERP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory