PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF1980 (742 amino acids)

SeqID: GFF1980 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1708408: Isocitrate dehydrogenase [NADP]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF1980
MSTPSKIIYTFTDEAPALATYSLLPIVEAFAASAEIAVETRDISLAGRILASFADQLDAD
KKVDDDLAKLAELTNQPDANIIKLPNISASVPQLKAAIAELQALGYNIPNFPEDPQTDAE
KDARARYSKVLGSAVNPVLREGNSDRRAPAAVKAYARKHPHSMGKWSKASQSHADYMRGG
DFFSSEQSITMEKAGDVRIEFVGKDGKVEVKKQLALQEGEVLDGMFMSCNKLRAFFEETL
QDCKETGVMWSLHVKATMMKISHPIVFGHAVSVYYKDVFDKYGELFKELGVNPNNGISSV
YDKIKSLPVSQQEEILHDIHEVYAHRPEMAMVDSVKGITNLHIPSDVIVDASMPAMIRNS
GQMWGKDGKQKDTKAVMPESTYARIYQEMINFCKTNGAFDPVTMGSVPNVGLMAQKAEEY
GSHDKTFEMQADGTMRVVLADGTVLMQHEVEKGDIWRACQTKDAPIRDWVKLAVTRARQS
NTPAIFWLDPERAHDRQLQEKVETYLKDHDLSGLDIRIMGYNEAIRVSMERMIRGQDTIS
VTGNVLRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMYETGAGGSAPKHVQQLVEENYLR
WDSLGEFLALAVSLEETGIKTGNVKAKILGKTLDQATGKLLDNNKSPARKVGQLDNRGSH
FYLALYWAQALAAQDEDAELKAHFAPLAKQLTEQEATIVDELAAVQGKPVDIGGYYRSNP
ELTSKVMRPSATFNSALAALNA