PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2032 (749 amino acids)

SeqID: GFF2032 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16131943: biodegradative arginine decarboxylase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            7.33
    CytoplasmicMembrane    2.64
    Periplasmic            0.03
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2032
MYKDLKFPILIVHRDIKADTVAGERVRGIASELERDGFNILPTASSNEGRIVASTHHGLA
CILVAAEGAGDNQRLLHDVVELIRVARRRAPRLPIFALGEQVTIENAPAEAMADLNELRG
LLYLYEDTVPFLARQVARAARSYLDDLLPPFFSALVRHTGESNYSWHTPGHGGGVAYRKS
PVGQAFHQFFGENTLRSDLSVSVPELGSLLDHTGPVAAAEARAARNFGADHTFFVINGTS
TANKIVWHSMVARDDLVLVDRNCHKSILHAIIMTGAIPLYMSPTRNELGIIGPIPLEEFT
RESIQAKIAANPLARGRPPKVKLAVVTNSTYDGLCYNANLIKRTLADNVEVLHFDEAWYA
YAAFHEFYDGRYGMDTREQGPLVFTTHSTHKLLAAFSQASMIHVLDSQTRQLDRDRFNEA
FMMHISTSPQYGILASLDVASAMMEGPAGRSLIQETFDEALSFRRALANLRQHIDADDWW
FSIWQPPLVDGAEALVTPDWLLEPTADWHGFGEIADDYVLLDPIKVTLVTPGLTASGALG
KSGIPAAVVSKFLWERGLVVEKTGLYSMLVLFSMGITKGKWSTLLTELLEFKRHYDANIP
LVEALPSIARKGAATYAGMGLRDLCDALHACYCENATARAMRRMYTALPEPAMTPAQAYD
KLVRGEVEAVPIEALEGRIAAVMLVPYPPGIPLIMPGERFTGETRSILDYLRFARDFAER
FPGFDADVHGLQHEVGVGGSSYTVDCIRE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory