PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2054 (787 amino acids)

SeqID: GFF2054 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2054
MPKDSGIGASPKRREDVRFLTGTGNYTDDINMRGQAYVHFLRSDVAHGRLTSVDTSDAAA
MPGVVRIFTGADFEGVGGLPCGWQVTDRHGEVMQEPAHPVLAQGKVRHVGDPIAAVVAET
PEQARDAAEAIVLDIEDLPAVINMKEAVKDGATKVHDDLTSNLCYDWGFVEENRGAVDKA
IKDAAHVTTLELVNNRLVANPMEPRVAVGDFNRATGDSTLYTTSQNPHVIRLLMGAFVLG
IPEHKLRVVAPDVGGGFGSKIFHYAEEAFCTFAAKALNRAVKWTSSRSEAFMSDAHGRDH
VTKIELALDADNNFTALRTETYANMGAYLSTFAPSVPTWLHGTLMAGNYKTPLIYVNVKA
VFTNTVAVDAYRGAGRPEATYQLERVIDKAARELGVDPIALRRQNFITEFPYATPVAVEY
DTGDYVATMDKLEEIADLSGFDARRAASKAKGKLRGLGVNCYIEACGIAPSNLVGQLGAR
AGLYESATVRVNATGGIVVMTGSHSHGQGHETSFPQVIADMIGIPEDMVEIEHGDTDKAP
MGMGTYGSRSLAVGGSAMVRATEKIIAKAKKIAAHILEASDADIELKDGQFTVAGTDKSL
AWGDVTLAAYVPHNYPLEDIEPGLEETAFYDPANFTYPSGAYACEVEVDPDTGKVTIERF
AAADDFGNIVNPMIVDGQVHGGIGQGIGQALLEGCVYDDDGQLLSASFMDYAMPRADDLP
FYKVDHSCQTPCTHNPLGVKGCGEAGAIGTPPAVVNAVVDALQSAGKDVTHIDMPLSPAR
VWAAMNG