PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on GFF2118 (707 amino acids)

SeqID: GFF2118 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>GFF2118
MTTKTDDWRALAEKELRGRPLDALTWNTLEGIDVKPLYTEADTKDLPHMGTMPGFGPFTR
GVKATMYAGRPWTIRQYAGFSTAEESNAFYRRNLAAGQQGVSVAFDLATHRGYDSDHPRV
MGDVGKAGVAIDSVEDMKILFDGIPLDQVSVSMTMNGAVIPILASFIVAGEEQGHDKSLL
AGTIQNDILKEFMVRNTYIYPPEPSMRIISDIIEYTSNEMPKFNSISISGYHMQEAGANL
VQELAYTLADGREYVRAAMEAGMDVDKFAGRLSFFFAIGMNFFMEIAKLRAARTLWHRVM
TDFDAKNDRSKMLRTHCQTSGVSLQEQDPYNNVIRTAYEAMSAVLGGTQSLHTNALDEAI
ALPTDFSARIARNTQLVLQEETGVTNVVDPLAGSYYVESLTNELIEKAWALMEEVEEMGG
MTKAVASGMPKLRIEESAARRQAMIDRGEEVIVGVNKYRKEKEDPIDILDVDNVAVRDSQ
IARLETLRADRDSAACEAALDNLTRVAKEGGNLLAAAVEAARARASVGEISMAMEKEFGR
HSAEVKTLAGVYGAAYEGDEGFAAIQKSIEDFAEAEGRRPRLLVVKMGQDGHDRGAKVIA
TAFADIGFDVDVGPLFQTPDEAAQDAIDNDVHVVGISSQAAGHKTLAPQLVKALKEQGAE
DIIVICGGVIPQQDYQFLYDNGVKAIFGPGTNIPEAAQDILKLIRQS

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory